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  1. Jalview
  2. JAL-711

Consensus line should use IUB codes

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: analysis, file format issue, renderer
    • Labels:
      None

      Description

      Maybe just an opinion but, I think the consensus line in Jalview should use the IUB codes instead of columns' dominant base and instead of "+" in the 50-50 cases.

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          depends on

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1463 efficient encoding of programmatically generated alignment and sequence annotation rows

          • Critical - Crashes, loss of data, severe memory leak.
          • Open
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-790 Ambiguity codes not supported in PID calculation for trees

          • Critical - Crashes, loss of data, severe memory leak.
          • In Progress

          New Feature - A new feature of the product, which has yet to be developed. JAL-521 support IUPAC nucleotide ambiguity codes

          • Critical - Crashes, loss of data, severe memory leak.
          • Open

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              Assignee:
              jprocter James Procter
              Reporter:
              nrgiroux@gmail.com Richard Giroux
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                Dates

                Created:
                Updated: