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  1. Jalview
  2. JAL-390

basic DNA, RNA (or general nucleic acid sequence) manipulation tools

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    Details

    • Type: Epic
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
      None
    • Epic Name:
      basicdnarnamanipulation
    • Mantis ID:
      53970

      Description

      A number of requests have been made concerning the use of jalview with DNA and RNA.

      This is a basic feature request - see related feature requests and bugs, and notes below.


      ****** ADDITIONAL INFORMATION ******

      Most recent call on discuss-jalview:
      http://www.compbio.dundee.ac.uk/pipermail/jalview-discuss/2009-August/000219.html

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          depends on

          Bug - A problem which impairs or prevents the functions of the product. JAL-154 web service to align dna to protein (tblastn or tblastx)

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-157 calculate melting temp of region

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-165 JNet server code does not verify valid input to service

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-432 associations between nucleic acid sequences and structures

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Resolved

          New Feature - A new feature of the product, which has yet to be developed. JAL-521 support IUPAC nucleotide ambiguity codes

          • Critical - Crashes, loss of data, severe memory leak.
          • Open

          New Feature - A new feature of the product, which has yet to be developed. JAL-156 specify start codon

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open

          New Feature - A new feature of the product, which has yet to be developed. JAL-391 Reversing and Complementing DNA

          • Major - Major loss of function.
          • Closed

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: