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  1. Jalview
  2. JAL-3914

Import model reliability scores encoded as temperature factor annotation with their correct name and semantics

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    Details

    • Type: Improvement
    • Status: In Progress
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.2, 2.11.3.0, 2.11.4.0
    • Fix Version/s: 2.11.4, 2.12.0
    • Component/s: None
    • Labels:
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      Description

      Alphafold models are imported with an accompanying reliability score. This happens by recognising the ID 'AF-...' in the file. We could implement similar mechanisms for other sources of model data, but it would also be great to use the metadata provided by 3D-Beacons for interpreting the temperature factor column.

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          depends on

          Bug - A problem which impairs or prevents the functions of the product. JAL-4430 1crn PDB imported as alphafold model, when it is not!

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-3895 Alphafold red/orange/yellow/green colourscheme for structures

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-4311 properly handle 3d-beacons sources other than alphafold providing PLDDT confidence scores & shading from model quality score type response

          • Major - Major loss of function.
          • In Progress

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: