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  1. Jalview
  2. JAL-3238

'Disordered region' secondary structure state

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    Details

    • Type: New Feature
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.11.1
    • Component/s: annotation
    • Labels:
      None

      Description

      Disordered residues in 3D structures are currently visualised in Jalview's structure derived secondary structure annotation line as an *absence* of annotation, and thus indistinguishable from regions of the associated sequence excluded from the structure determination.

      'Not observed' regions are marked in SIFTs records, but those are only visible as sequence features - not annotation rows. One option would be to introduce a new glyph and 'Disordered' symbol to highlight those positions and allow them to be used for annotation-based selection.

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          depends on

          New Feature - A new feature of the product, which has yet to be developed. JAL-2009 Support for residue insertion codes in PDB data

          • Major - Major loss of function.
          • In Progress

          New Feature - A new feature of the product, which has yet to be developed. JAL-1479 PDB<->Uniprot mappings from SIFTS

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed
          related with

          Story - Created by Jira Software - do not edit or delete. Issue type for a user story. JAL-3237 Show numbering of reference sequence in upper scale and interactive secondary structure/disorder annotation

          • Major - Major loss of function.
          • In Progress

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              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: