Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-2893

Cannot roundtrip between EnsemblGenomes and Uniprot cross-refs for some IDs

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: 2.10.1, 2.10.2, 2.10.2b2, 2.10.3, 2.10.3b1
    • Fix Version/s: 2.10.4
    • Component/s: cds/protein

      Description

      Retrieve EnsemblGenomes: CAD01290. Now retrieve cross-refs for the retrieved transcript: a view is shown with CAD01290 for both CDS and protein.

      Although the protein product has a cross-reference to UNIPROT Q8Z9G6, and an ENSEMBLGENOMES ID of CAD01290, no crossreference is shown for the protein product (though there is for the CDS).

        Attachments

          Issue Links

          blocks

          Task - A task that needs to be done. JAL-2969 review and revise Structure help documentation

          • Major - Major loss of function.
          • Open
          duplicates

          Bug - A problem which impairs or prevents the functions of the product. JAL-2789 CDS not handled correctly if transcript has no UTR

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2679 Cannot retrieve ENA crossreferences for Uniprot sequence corresponding to EnsemblGenomes example ID

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
              Votes:
              0 Vote for this issue
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: