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  1. Jalview
  2. JAL-2679

Cannot retrieve ENA crossreferences for Uniprot sequence corresponding to EnsemblGenomes example ID

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.10.0, 2.10.1, 2.10.2, 2.10.2b1
    • Fix Version/s: 2.10.3, 2.10.3b1
    • Labels:
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      Description

      EnsemblGenomes has an example ID:DDB_G0283883
      This has a crossreference to uniprot: Q54Q10

      1. Showing crossreference to Uniprot only yields a transcript & product containing many '*'s (EAL65556). On 2.10.2, it takes several minutes to show this single CDS/Product sequence.

      2. Retrieving the Uniprot record Q54Q10, and then asking for ENA crossreferences results in an ENA record being retrieved, but no CDS/Protein window is shown. The corresponding record should be: EAL65284 (parent is AAFI01000105).

      Retrieving EAL65284 yields a protein with no corresponding Uniprot ID (?!) and the parent ENA record is also not retrievable.

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter Jim Procter
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                Updated:
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