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  1. Jalview
  2. JAL-2808

Filter features by attribute value conditions

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.11.0
    • Component/s: analysis, sequencefeatures
    • Labels:
      None

      Description

      Add the ability to filter sequence features based on one or more conditions on the value of feature attributes.

      [Note: started life as a change to Graduated Colour Scheme but changed to provide feature filtering independently of colouring. For colouring by attribute see JAL-2069.]

        Attachments

        1. FeatureFilter_1.png
          FeatureFilter_1.png
          289 kB
        2. FeatureFilter_2.png
          FeatureFilter_2.png
          177 kB
        3. FeatureFilter_3.png
          FeatureFilter_3.png
          269 kB
        4. FeatureFilter_4.png
          FeatureFilter_4.png
          349 kB
        5. FeatureFilter_5.png
          FeatureFilter_5.png
          94 kB
        6. FeatureFilter_6.png
          FeatureFilter_6.png
          89 kB
        7. JalviewJSTabbedViews.png
          JalviewJSTabbedViews.png
          194 kB
        8. JalviewJSUntabbedView.png
          JalviewJSUntabbedView.png
          130 kB

          Issue Links

          blocks

          Improvement - An improvement or enhancement to an existing feature or task. JAL-3186 Remove 'Variable Colour' from Sequence Features popup menu

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed
          depends on

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2791 Operations on features should respect individual feature visibility

          • Major - Major loss of function.
          • Closed
          duplicates

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2059 Freetext threshold for feature display

          • Major - Major loss of function.
          • Closed
          related with

          Story - Created by Jira Software - do not edit or delete. Issue type for a user story. JAL-2744 User controls to view and/or analyse by feature attributes

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-3574 Filtering features by genomic location is broken by rounding

          • Major - Major loss of function.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-3010 Make Feature Settings 'ontology aware'

          • Critical - Crashes, loss of data, severe memory leak.
          • In Progress

          New Feature - A new feature of the product, which has yet to be developed. JAL-3470 Offer option to filter features by length

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • In Progress

          New Feature - A new feature of the product, which has yet to be developed. JAL-2069 Colour features by attribute value

          • Major - Major loss of function.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-2432 filter/threshold annotation rows by percentile or absolute numbers

          • Major - Major loss of function.
          • Closed

          Task - A task that needs to be done. JAL-2843 Provide persistence for filter or colour by feature attribute

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2816 Exclude filtered features from display in Tooltip and other functions

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2835 Support visualisation of VEP (variant effect predictor) data

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2593 Avoid redundant rendering of co-located features

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-3020 Prompt for attribute values in feature filters

          • Major - Major loss of function.
          • Ready for testing

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated:
                Resolved: