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  1. Jalview
  2. JAL-2786

Custom taxon lists for ensemblGenomes gene id lookup

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      Description

      Selecting EnsemblGenomes and entering a gene name results in symbol resolution queries to EnsemblGenomes for the hardcoded model organisms set that Jalview is shipped with.

      Since EnsemblGenomes carries none of these, this is wasted bandwidth. It would be better if we had sensible taxon sets for EnsemblGenomes, in the same way as we have the model organism set for the core Ensembl warehouse.

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          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-2087 Reusable UI component for taxon selection

          • Major - Major loss of function.
          • In Progress

          Task - A task that needs to be done. JAL-3193 Update Jalview for merge of Ensembl and EnsemblGenomes REST services

          • Major - Major loss of function.
          • In Progress

          Bug - A problem which impairs or prevents the functions of the product. JAL-2253 Fetch DBRefs from EnsemblGenomes very slow when no entries are found

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Created:
                Updated: