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  1. Jalview
  2. JAL-2666

No linked scrolling of CDS from peptide view of CDS/Protein products from gene query to Ensembl

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.10.2, 2.10.3, 2.10.3b1
    • Fix Version/s: 2.10.4
    • Component/s: gui
    • Labels:
      None

      Description

      1. Perform a gene query in Ensembl - e.g. 'abc1'
      2. show Uniprot cross-references
      3. Horizontal scrolling via the horizontal scroll bar for the peptide view doesn't cause the CDS view to scroll. However, scrolling works from CDS to Protein.

      Also: Protein and CDS horizonal scrolling is not linked for the single CDS/Protein view for EnsemblGenomes CAD01290. Scrolling works for a view after adding a duplicate sequence by copy and paste.

      [Updated for 2.10.3: Overview linked scrolling was fixed in a separate issue).

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          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2679 Cannot retrieve ENA crossreferences for Uniprot sequence corresponding to EnsemblGenomes example ID

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-2789 CDS not handled correctly if transcript has no UTR

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

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              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: