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  1. Jalview
  2. JAL-2590

trees loaded from eggnog don't draw correctly, with null pointer exceptions

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Minor
    • Resolution: Won't Fix
    • Affects Version/s: 2.10.1, 2.10.2, 2.10.3
    • Fix Version/s: None
    • Component/s: file format issue
    • Labels:

      Description

      Unzip the attached file, import the alignment (very large), and also the tree. Exceptions like:

      Warning: SidebarTreeModel uses default user items.
      Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
      at jalview.gui.TreeCanvas.drawNode(TreeCanvas.java:335)
      at jalview.gui.TreeCanvas.drawNode(TreeCanvas.java:310)
      at jalview.gui.TreeCanvas.drawNode(TreeCanvas.java:310)
      at jalview.gui.TreeCanvas.drawNode(TreeCanvas.java:312)
      at jalview.gui.TreeCanvas.drawNode(TreeCanvas.java:310)
      at jalview.gui.TreeCanvas.drawNode(TreeCanvas.java:310)

      appear, and the tree panel doesn't render.

        Attachments

          Issue Links

          depends on

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-1953 Archaeopteryx integration with Jalview

          • Major - Major loss of function.
          • In Progress
          related with

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2637 allow tree leaf <> Sequence ID binding where the leaf node has ID words separated by '.'

          • Major - Major loss of function.
          • Open

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: