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  1. Jalview
  2. JAL-2637

allow tree leaf <> Sequence ID binding where the leaf node has ID words separated by '.'

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
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      Description

      The Eggnog database uses normal sequence db IDs in its alignments, but the leaf names in its NHX trees are named <taxonID>.<sequenceId>. That means that although Jalview can import the tree, it cannot actually associate the leaves to sequences since the relaxed matching does not treat '.' as a word boundary.

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          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2590 trees loaded from eggnog don't draw correctly, with null pointer exceptions

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: