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  1. Jalview
  2. JAL-244

Automatically adjust Left margin to avoid cropping of annotation labels longer than sequence ID's in PNG output

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.11.3.0
    • Component/s: Feature Request
    • Labels:
      None
    • Mantis ID:
      17087

      Description

      Its really easy to forget to adjust the margins of a figure to get all the annotation row labels displayed correctly. This would reduce the number of PNG regenerations needed to get a good figure image (and improve usability of headless jalview). An alternative would be to justify and wrap the annotation text in the annotation rows (so wrap both labels and individual column labels).

        Attachments

          Issue Links

          blocks

          New Feature - A new feature of the product, which has yet to be developed. JAL-986 option to allow sequence id panel to become as wide as possible when exporting an alignment figure

          • Major - Major loss of function.
          • Open

          New Feature - A new feature of the product, which has yet to be developed. JAL-4233 nf-core/proteinfold integration

          • Major - Major loss of function.
          • Open

          New Feature - A new feature of the product, which has yet to be developed. JAL-985 user definable width for sequence ID panel

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • In Progress

          New Feature - A new feature of the product, which has yet to be developed. JAL-4281 store and restore adjustable ID margin and annotation panel height in Jalview projects

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-4260 Adjustable ID margin in wrapped mode

          • Major - Major loss of function.
          • Closed
          mentioned on

          GitLab Commit - JAL-244 knock on - make sure alignPanel is laid out properly after adjusting...

          GitLab Commit - JAL-244 noticed NPE exception was possible when visibility was adjusted in wrapped mode

          GitLab Commit - JAL-4260 reinstate annotation auto-id-width for wrapped view in headless mode...

            Activity

              People

              Assignee:
              soares Ben Soares
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: