Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-2154

Wrong start/end on mapped dataset sequence after reloading project

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.10.0
    • Component/s: None
    • Labels:

      Description

      Fetch EMBL example X53828, show Cross-Refs for Uniprot.
      Sequences and mappings are
      X53828/1-1575 [60, 1058] 3:1 to [1, 332] P00340/1-332
      CAA37824.1 [1, 999] 3:1 to [1, 332] P00340
      X53828 [60, 1058] 1:1 to CAA37824.1 [1, 999]
      Save to project and reload. The dataset sequence for X53828 has start/end 60/1058, should be 1/1575.

        Attachments

          Issue Links

          blocks

          Bug - A problem which impairs or prevents the functions of the product. JAL-2110 Duplicate uniprot entries from Ensembl->Show cross-refs->Uniprot

          • Major - Major loss of function.
          • Closed
          depends on

          Task - A task that needs to be done. JAL-2106 change SequenceI.getSourceDBRef() to getPrimaryDBRefs()

          • Major - Major loss of function.
          • Closed
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2023 Error loading project saved with CDS/protein split frame

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-2155 CDS consensus row counts both transcript and locus CDS mappings for protein sequences

          • Major - Major loss of function.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-2179 ENA secondary accession field not imported

          • Major - Major loss of function.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-2157 Cannot import PDB 4uj3

          • Major - Major loss of function.
          • Resolved

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              gmungoc Mungo Carstairs
              Votes:
              0 Vote for this issue
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: