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  1. Jalview
  2. JAL-1656

Round trip test case for RNA secondary structure parsing

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    Details

    • Type: Task
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.10.2
    • Component/s: Datamodel, na
    • Labels:
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      Description

      See JAL-1081 - we decided to utilise the VARNA parser for processing all kinds of RNA secondary structure annotation lines in favour of [~lmlui]'s original parser, but the mechanism was not fully tested as of 2.8.2 release.

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          depends on

          Bug - A problem which impairs or prevents the functions of the product. JAL-2509 WUSS notation for simple pseudoknots lost when importing RNA secondary structure via Stockholm

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2507 per-sequence RNA secondary structure not always written to stockholm file

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Created:
                Updated:
                Resolved: