Details
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Type: Bug
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Status: Closed
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Priority: Critical
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Resolution: Fixed
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Affects Version/s: 2.8
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Fix Version/s: 2.8.2
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Component/s: Datamodel, file format issue
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Labels:
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Epic Link:
Description
The WUSS parser routine in jalview.analysis.Rna (see http://source.jalview.org/gitweb/?p=jalview.git;a=commit;h=d5c5166fcfbdaec2297d68e1e47a869e3bf2049b ) does not honour different bracket forms in the WUSS string.
Formally:
( [ { } ) ]
results in the following pairs:
1,5
2, 6
3,4
But the parser will produce:
1,6
2, 5
3, 4
Formally:
( [ { } ) ]
results in the following pairs:
1,5
2, 6
3,4
But the parser will produce:
1,6
2, 5
3, 4
Attachments
Issue Links
- depends on
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JAL-1598 allow pseudoknots imported into Jalview to be visualised in VARNA
- Closed