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  1. Jalview
  2. JAL-1081

wuss parser does not cope with pseudoknots

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      Description

      The WUSS parser routine in jalview.analysis.Rna (see http://source.jalview.org/gitweb/?p=jalview.git;a=commit;h=d5c5166fcfbdaec2297d68e1e47a869e3bf2049b ) does not honour different bracket forms in the WUSS string.

      Formally:
      ( [ { } ) ]

      results in the following pairs:
      1,5
      2, 6
      3,4

      But the parser will produce:
      1,6
      2, 5
      3, 4

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Created:
                Updated:
                Resolved: