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  1. Jalview
  2. JAL-2509

WUSS notation for simple pseudoknots lost when importing RNA secondary structure via Stockholm

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: 2.9, 2.10.0, 2.10.1
    • Fix Version/s: 2.10.2
    • Component/s: na
    • Labels:
      None

      Description

      Import of a stockholm file containing pseudoknotted RNA secondary structure like ..((..[[..))..]].. results in secondary structure like ..((..((..))..))..

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          blocks

          Task - A task that needs to be done. JAL-1656 Round trip test case for RNA secondary structure parsing

          • Major - Major loss of function.
          • Closed
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-1863 Cannot export and reimport RNA secondary structure via jalview annotation file

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-2507 per-sequence RNA secondary structure not always written to stockholm file

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: