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  1. Jalview
  2. JAL-1583

MSA web services should warn user if they were launched with invalid input

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.8.2
    • Component/s: JWS-GUI, JWS2
    • Labels:
      None

      Description

      Currently, no checks are made to ensure the input data for a JABA MSA service is valid. This should be done before the service is invoked, to avoid confusing the external services.

      A valid input is: minimum of two sequences with at least one non-gap character in each sequence.

      There are some additional nuances - JABA MSA services may become unhappy if exotic amino acid or nucleotide symbols are submitted (see JWS-63 for the corresponding service metadata issue about this)

        Attachments

          Issue Links

          blocks

          Bug - A problem which impairs or prevents the functions of the product. JAL-1604 Entire alignment sequence is submitted to MSA job when selected sequence group is one

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-536 web services that cannot be run with the current selection/data should not be presented to user

          • Critical - Crashes, loss of data, severe memory leak.
          • Open
          related with

          Improvement - An improvement or enhancement to an existing feature or task. JWS-63 indicate what range of sequence symbols are allowed in service metadata

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open

            Activity

              People

              Assignee:
              tcnofoegbu Tochukwu Charles N Ofoegbu
              Reporter:
              dmamartin dmamartin
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                Dates

                Created:
                Updated:
                Resolved: