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  1. Jalview
  2. JAL-1264

show/hide all sequence associated annotation rows for all or current selection

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 2.8, 2.8.1
    • Fix Version/s: 2.8.2
    • Component/s: gui
    • Labels:
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      Description

      A submenu option is needed to show or hide all the sequence associated alignment annotation for the current sequence, sequence selection, or for the whole alignment.

      Key functions needed:
      * control which kinds of sequence associated annotation are shown on the alignment
       - secondary structure from structure
       - secondary structure from prediction method
       - disorder from one or many prediction methods

      -> The alignment annotation has a 'CalcID' field which can be used to determine what created the annotation, but currently, there are no human readable look up tables that could be used to display a descriptive string for a particular CalcID.
      -> older Jalview annotation datasets do not have a CalcID field (particularly those created by external applications). Here, we can hide/show annotation according to label (the string shown in the annotation ID panel),

      * sorting and reordering annotation
       - there are no annotation sorting modes provided at the moment, but these are now needed:
        . show similar types of annotation (secondary structure, disorder) together or grouped by sequence/sequence group

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Updated:
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