Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-1260

Import genbank file

    XMLWordPrintable

    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.11.2
    • Fix Version/s: 2.11.2, 2.11.2.0
    • Component/s: file format issue
    • Labels:
      None

      Description

      [Edited by Jim] - GenBank import would allow sequence and annotation data from a wide variety of data sources (such as DNADynamo) to be imported to Jalview.

        Attachments

        1. pJET 2.1.gb
          4 kB
          Dharmender Kumar

          Issue Links

          blocks

          New Feature - A new feature of the product, which has yet to be developed. JAL-1375 Retrieval of sequences and features from Entrez by GI, GenBank or RefSeq ID

          • Critical - Crashes, loss of data, severe memory leak.
          • Open
          depends on

          Task - A task that needs to be done. JAL-2114 Parse GenBank/ENA location specifiers

          • Major - Major loss of function.
          • Closed
          related with

          Task - A task that needs to be done. JAL-3692 Update ENA endpoint for EMBL/CDS sequence retrieval

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-3877 Parse LOCUS line of GenBank file to obtain possibly missing ACCESSION id (and other useful metadata)

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              dkg502 Dharmender Kumar
              Votes:
              0 Vote for this issue
              Watchers:
              4 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: