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  1. Jalview
  2. JAL-2114

Parse GenBank/ENA location specifiers

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    Details

    • Type: Task
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.10.0
    • Component/s: jvdesktop
    • Labels:
      None

      Description

      See http://www.insdc.org/files/feature_table.html#3.4.3 for syntax.
      See http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html for (not comprehensive) examples.

      Required for moving to ENA XML 1.2.

        Attachments

          Issue Links

          blocks

          New Feature - A new feature of the product, which has yet to be developed. JAL-1260 Import genbank file

          • Major - Major loss of function.
          • Closed

          Task - A task that needs to be done. JAL-1855 Update to latest version of ENA fetch service

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2113 Update EMBL fetch to parse version 1.2 of EMBLXML

          • Major - Major loss of function.
          • Closed
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2027 EMBL parsing of CDS does not respect 'complement()' operator

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated:
                Resolved: