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  1. Jalview
  2. JAL-897

arrows from different stems in same direction are not marked as distinct

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: 2.5.1_rna, 2.7_gsoc11
    • Fix Version/s: 2.7_gsoc11
    • Component/s: None
    • Labels:
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      Description

      The arrows drawn under a structure like:

      (((((...)))..)))

      should be distinct for each contiguous helical segment - e.g.
      -->--> <-- <--

      However, the rendering code inherited from version 2.5.1_rna only uses the adjacent annotation elements to decide helical continuity - not the helical numbering assigned using the RNA structure processing algorithm used to generate the alignment's helical colourscheme. This means, the arrows can only be rendered as:
      ------> <-- <--
       

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              Assignee:
              janengelhardt Jan Engelhardt
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: