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  1. Jalview
  2. JAL-882

Jalview can not visualize non-standard gaps with VARNA

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.7_gsoc11
    • Component/s: gui, na
    • Labels:
      None
    • Environment:
      Gentoo Linux

      Description

      VARNA is not able to handle gaps different from ".", "-" and ":". Therefore a method to replace everything that is not a bracket "([{<" was created and called everywhere where a structure is handed over to the VARNA RNA class.
      We have to reconsider this when it is clear if VARNA will stay with such a gap handling or not.

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            Assignee:
            janengelhardt Jan Engelhardt
            Reporter:
            janengelhardt Jan Engelhardt
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              Created:
              Updated:
              Resolved: