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  1. Jalview
  2. JAL-71

EBI uniprot record PDB database reference format changed

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.07
    • Component/s: web service bug
    • Labels:
      None
    • Mantis ID:
      8321

      Description

      Uniprot xml record parser has got out of date. The attachment contains the records for FER1_SPIOL, a sequence with known structure (and new PDB dbReference entry), and FER_CAPAN, a sequence with no characterised structure but HSSP defined homology to FER1_SPIOL. Jalview only finds the homolog structure for FER_CAPAN, and doesn't discover the pdb id for FER1_SPIOL.

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              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
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                Created:
                Updated:
                Resolved: