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  1. Jalview
  2. JAL-678

test PIR/FASTA/BLC file type recognition and IO of metadata associated with sequences (viz. the Modeler description lines)

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      Description

      need to test alignment file identify routine and file output/input/output to ensure modifications to PIR identification and modeller IO lines are correct.

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          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-2012 Support for BLC file I/O

          • Major - Major loss of function.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-664 Modeller PIR IO broken - cannot correctly import a pir file emitted by jalview

          • Major - Major loss of function.
          • Resolved

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-2445 More robust parser selection strategy for input data

          • Major - Major loss of function.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-389 FASTA file with sequence IDs beginning 'P1;' confuses IdentifyFile

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-1694 JalviewLite can't import sequences with ID descriptions containing angle brackets

          • Major - Major loss of function.
          • Closed

          Task - A task that needs to be done. JAL-1816 Test cases for IdentifyFile

          • Major - Major loss of function.
          • Closed

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Updated: