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  1. Jalview
  2. JAL-580

parsing of RNA secondary structure annotation lines in stockholm files

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.5.1
    • Fix Version/s: 2.5.1, 2.8.2b1, 2.9
    • Component/s: file format issue
    • Labels:
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      Description

      the annotation lines in stockholm files often includes long runs of repeating symbols like:
      '>>>>'

      Jalview currently displays these long runs as a single :
      '> ' - treating the run as a contiguous segment of 'protein secondary structure', which, is of course, wrong.



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          Task - A task that needs to be done. JAL-826 merge jalview 2.5.1_rna with 2.7 branch

          • Major - Major loss of function.
          • Resolved
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-351 secondary structure imported from stockholm cannot be exported and imported again via annotation file

          • Major - Major loss of function.
          • Resolved

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              Assignee:
              janengelhardt Jan Engelhardt
              Reporter:
              jprocter James Procter
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                Updated:
                Resolved: