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  1. Jalview
  2. JAL-4648

Persist compact version of MSA (ie AlignmentView) in Jalview Project

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    • Type: Task
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.12.0
    • Component/s: Jalview Project
    • Labels:
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      Description

      Most web service jobs involving an alignment hold an immutable instance of jalview.datamodel.AlignmentView corresponding to the (possibly aligned) sequence data as it was shown when submitted to the service.

      This immutable AlignmentView is referred to by implementations of jalview.ws2.actions.BaseTask.collectResult(List<T>) in order to produce a view of the results (if any) from the web service calculation, e.g. for MSAs it is used to reassemble distinct MSA subjobs for visible regions.

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            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
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              Created:
              Updated: