[JAL-4354] Allow many structure(s) to be loaded and viewed (optionally superimposed) via command line - Jalview

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Type: Improvement
Status: Closed
Priority: Blocker
Resolution: Fixed
Affects Version/s: 2.11.3
Fix Version/s: 2.11.5.0
Component/s: Command Line Interface
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JAL-1017 allow user to specify which structure or sequence is used as reference when making structural superposition

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Commit - JAL-4354 2 slight adjustments to fix broken tests

Commit - JAL-4354 Add a '--viewerid' subval or arg for '--structure's. structures...

Commit - JAL-4354 added an --allstructuresviewerid which works within --open MSA...

Commit - JAL-4354 Added new structures args and structuresfile format to help docs....

Commit - JAL-4354 Allow a subval [superpose] or [nosuperpose] to be added to a...

Commit - JAL-4354 Change superpose default to AUTOSUPERIMPOSE preference. Some...

Commit - JAL-4354 First cut at allowing superimposition of structures. Use...

Commit - JAL-4354 Fixed --help text

Commit - JAL-4354 Now open --structuresfile=... with sample example/structuresfile.txt....

Commit - JAL-4354 Preparing SequenceI array and PDBEntry array to open all files in...

Commit - JAL-4354 Re-wording and re-ordering of the new structures arguments. Changed...

Commit - JAL-4354 Swiss Model and AlphaFold structures for FER_CAPP. Useful for CLI...

Commit - JAL-4354 Tests and quick fix in doc

Commit - JAL-4531 JAL-4354 release notes

Commit - Merge branch...

Merge request - JAL-4354 First cut at allowing superimposition of structures. Use...

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Assignee:: Ben Soares

Reporter:: James Procter

Votes:: 0 Vote for this issue

Watchers:: 3 Start watching this issue

Dates

Created:: 05/Dec/23 3:16 PM

Updated:: 2 days ago 4:37 PM

Resolved:: 08/Jul/25 4:02 PM