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  1. Jalview
  2. JAL-4303

annotation colouring should allow switch between 'use alignment colours' and 'use colour from annotation'

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: 2.11.2.7, 2.11.3.0, 2.11.3.1, 2.11.3.2
    • Fix Version/s: 2.11.3.3
    • Component/s: None
    • Labels:

      Description

      Currently, Jalview's UI interprets the setting of the Annotation Color dialog's 'Use original colours' checkbox to 1) use the annotation's values + defined threshold to filter of an existing alignment colourscheme, and 2) shade sequences by colours from annotation row - e.g. red/green helix/sheet colours or PLDDT shading (JAL-3895).

      This is problematic when trying to shade alignments with a pre-existing colourscheme to one using annotation colours, since it is first necessary to set the alignment colouring to 'None'.

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Created:
                Updated: