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  1. Jalview
  2. JAL-4220

How to create a consensus sequence that only shows nucleotides above a certain probability

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    • Type: Task
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.2.7
    • Fix Version/s: None
    • Component/s: annotation
    • Labels:
      None
    • Urgency:
      Nice to have

      Description

      I was wondering if there was a way to make the consensus sequence only show nucleotides above a certain probability (ex. 85%) and to replace any nucleotides below this threshold with a "-" or other placeholder.

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          Task - A task that needs to be done. JAL-1382 Calculation dependency structure for Alignment analysis worker threads

          • Critical - Crashes, loss of data, severe memory leak.
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              Assignee:
              jprocter James Procter
              Reporter:
              deep deep s
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                Created:
                Updated: