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  1. Jalview
  2. JAL-4140

Temperature and Secondary structure reference annotation not displayed when PDB + PAE loaded via structure chooser local file option

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Cannot Reproduce
    • Affects Version/s: 2.11.3.0, 2.11.3.1, 2.11.3.2
    • Fix Version/s: 2.11.3.3
    • Component/s: gui, Structures, Test suite
    • Labels:
      None
    • Sprint:
      2.11.3.3 release

      Description

      [update] - not clear if the instructions below are sufficient to reproduce issue.

      1. Need failing tests to check that adding a local structure, optionally with PAE file for a sequence actually adds annotation rows to the alignment honouring the current structure import settings.

      See jalview.structure.StructureSelectionManagerTest.testAssociatedMappingToSubSeq() for example of how to do that (this one retrieves a structure via network..)

      2. Fix tests.
      3. Profit :)

        Attachments

          Issue Links

          blocks

          Story - Created by Jira Software - do not edit or delete. Issue type for a user story. JAL-4233 nf-core/proteinfold integration

          • Major - Major loss of function.
          • Open
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-3124 Protein structure derived annotation tracks not available as reference annotation unless 'add to alignment' preference is enabled

          • Critical - Crashes, loss of data, severe memory leak.
          • In Progress

          Bug - A problem which impairs or prevents the functions of the product. JAL-2321 cannot view structure annotation after dropping pdb structure on sequence

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-4407 Secondary structure not available after dragging a 3D structure onto a sequence to associate it

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: