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  1. Jalview
  2. JAL-3949

Standard out logging broken: messages only routing to stderr and appear as a raw template

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 2.11.1.7
    • Fix Version/s: 2.11.2, 2.11.2.0
    • Component/s: Command Line Interface, Dev and Dep
    • Labels:
      None
    • Environment:
      Best seen using shadowJar on command line.
    • Urgency:
      Urgent

      Description

      Since upgrading to log4j 2.16 and then 2.17, using the log4j 1 compatibility bridge for minimal re-coding, most/all Cache.log messaging is coming out on stderr, and only as (presumably the default template):
      %d [%thread] %-5level %logger - %msg%n

      It appears that INFO messages are appearing on the command line and in the Java Console, but DEBUG (or other) log levels are appearing as the template on STDERR and not at all in the Java Console.

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          related with

          Task - A task that needs to be done. JAL-3933 Use of log4j and mitigation of critical alert "Apache Log4j 2 vulnerability (CVE-2021-44228)"

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Task - A task that needs to be done. JAL-3934 Jalview 2.11.1.6 release for CVE-2021-45105 Update log4j2 to 2.17.0

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-3137 Support HiDPI scaling for hi-resolution displays

          • Major - Major loss of function.
          • Open

          Task - A task that needs to be done. JAL-3953 Update java2script bindings for log4j2 for JalviewJS

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

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              Assignee:
              soares Ben Soares
              Reporter:
              soares Ben Soares
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                Updated:
                Resolved: