Details
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Type: New Feature
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Status: In Progress
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Priority: Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: 2.12.0
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Component/s: file format issue, gui, gui design issue, renderer
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Labels:None
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Epic Link:
Description
c.a. 2017 a prototype shading model for combining hit score and posterior probability was developed based on data vis 'transparency' shading - where instead of applying simple alpha blending, posterior probability was encoded as the amount of desaturatation applied to a colour encoding of the hit score for hmmsearch results.
This 'hack' is perhaps generally useful, but a couple of things are needed:
- extend the AnnotationColourGradient api to support enabling/disabling and IO of these colourscheme definitions via annotation files.
- allow the colourschemes to be automatically applied when appropriate annotation data for sequences are available (e.g. detect posterior probability scores from hmm search results).
- explore whether this model can be reused for other types of data
- also explore if this model can be re-used for Consensus or Conservation shading.
This 'hack' is perhaps generally useful, but a couple of things are needed:
- extend the AnnotationColourGradient api to support enabling/disabling and IO of these colourscheme definitions via annotation files.
- allow the colourschemes to be automatically applied when appropriate annotation data for sequences are available (e.g. detect posterior probability scores from hmm search results).
- explore whether this model can be reused for other types of data
- also explore if this model can be re-used for Consensus or Conservation shading.
Attachments
Issue Links
- related with
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JAL-1463 efficient encoding of programmatically generated alignment and sequence annotation rows
- Open