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  1. Jalview
  2. JAL-3556

Sequence Logo incorrect - bottom letters waver along columns of alignment

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: 2.11.0, 2.11.1, 2.11.2, 2.11.3
    • Fix Version/s: 2.12
    • Component/s: None
    • Labels:
    • Environment:
      macOS Mojave Version 10.14.6 (18G3020)
      MacBook Pro (15-inch, 2018)
      Processor 2.6 GHz Intel Core i7
      Memory 32 GB 2400 MHz DDR4
      Graphics Radeon Pro 560X 4 GB Intel UHD Graphics 630 1536 MB
    • Urgency:
      Not urgent

      Description

      When stretching the sequence logo to a large size of my alignment, the bottom starting letters do not begin at the same position and are offset (see screenshot). The size of the individual amino acid symbols still agree with the distribution of amino acids. So maybe it is some bug with resizing that annotation track. I have attached my Jalview project just in case this cannot be reproduced, but I noticed this on other alignments every time.

        Attachments

        1. sequence_logo_screenshot.png
          917 kB
          Maxim Tsenkov
        2. tpr_alignment.jvp
          101 kB
          Maxim Tsenkov

          Issue Links

          related with

          Task - A task that needs to be done. JAL-2348 modularise annotation renderer

          • Major - Major loss of function.
          • In Progress

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              mitsenkov Maxim Tsenkov
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                Dates

                Created:
                Updated: