Details
-
Type: Improvement
-
Status: Open
-
Priority: Major
-
Resolution: Unresolved
-
Affects Version/s: 2.11.1.0
-
Fix Version/s: 2.12.0
-
Component/s: data retrieval services, file format issue
-
Labels:None
Description
Jalview omits or rearranges some meta data in a PFAM or RFAM record when importing from (or exporting to) Stockholm:
GF CC comments only retain the final line for multiline comments
GF and GS DR lines only retain the final database reference
AC lines are converted to DR lines, and the PFAM specific 'domain number' (added after a '.' in the AC for a sequence) is lost.
Ideally Jalview should preserve as much as possible to faciltate Jalview/JS's use for family curation.
See attached files.
GF CC comments only retain the final line for multiline comments
GF and GS DR lines only retain the final database reference
AC lines are converted to DR lines, and the PFAM specific 'domain number' (added after a '.' in the AC for a sequence) is lost.
Ideally Jalview should preserve as much as possible to faciltate Jalview/JS's use for family curation.
See attached files.
Attachments
Issue Links
- related with
-
JAL-3529 UniProt accessions not written in Stockholm format from Pfam
- Closed