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  1. Jalview
  2. JAL-3469

Read ClinVar VCF data

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    Details

    • Type: Improvement
    • Status: Ready for testing
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.0
    • Fix Version/s: 2.11.2
    • Component/s: variants
    • Labels:
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      Description

      ClinVar data has INFO fields declared as "Number=.". These are currently ignored by VCFLoader so the corresponding data fields are not parsed to feature attributes. Fix this.

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          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-3467 Annotate already loaded proteins and transcripts direct from Clinvar

          • Major - Major loss of function.
          • In Progress

          New Feature - A new feature of the product, which has yet to be developed. JAL-2738 Support loading VCF on to human gene sequence

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-3472 Controls to customise fields captured from VCF data

          • Major - Major loss of function.
          • Open

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated: