Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-3365

Secondary structure annotation beyond DSSP-3 state interpreted as RNA extended base pair contacts in Stockholm files

    XMLWordPrintable

    Details

      Description

      Fetch PF00001 from PFAM (seed) database and show annotations.
      Helix regions are incorrectly shown as other (beta sheet?).

        Attachments

          Issue Links

          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-3053 Support Vienna Extended Dot-Bracket Notation for RNA Secondary Structure

          • Major - Major loss of function.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-4219 Parse RNA secondary structure annotation from 'extended' fasta-style files

          • Major - Major loss of function.
          • Ready for testing

            Activity

              People

              Assignee:
              Unassigned Unassigned
              Reporter:
              geoff.barton Geoff Barton
              Votes:
              0 Vote for this issue
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated: