[JAL-3365] Secondary structure annotation beyond DSSP-3 state interpreted as RNA extended base pair contacts in Stockholm files - Jalview

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Details

Type: Bug
Status: Open
Priority: Blocker
Resolution: Unresolved
Affects Version/s: 2.10.5, 2.11.0, 2.11.1, 2.11.2.1, 2.11.3.0
Fix Version/s: 2.11.2, 2.11.3.1, 2.11.3
Component/s: data retrieval services, Datamodel, file format issue
Labels:
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Description

Fetch PF00001 from PFAM (seed) database and show annotations.
Helix regions are incorrectly shown as other (beta sheet?).

Attachments

Issue Links

blocks

JAL-4219 Parse RNA and Proteins secondary structure annotation from 'extended' fasta-style files

Ready for testing

related with

JAL-3053 Support Vienna Extended Dot-Bracket Notation for RNA Secondary Structure

Closed

Activity

People

Assignee:: James Procter

Reporter:: Geoff Barton

Votes:: 0 Vote for this issue

Watchers:: 2 Start watching this issue

Dates

Created:: 11/Jul/19 1:42 PM

Updated:: 06/Dec/23 1:42 PM