Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-3127

Shade mapped structures or alignment by Sequence's ID colour

    XMLWordPrintable

    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.11.0
    • Fix Version/s: 2.11.0
    • Component/s: Structures
    • Labels:
      None
    • Urgency:
      Highest

      Description

      When working with alignments of homologous sequences or sub-sequences, it would be useful to be able to colour associated structures according to their group (as defined by cutting a tree or a 'make subgroups' operation).

      This should work for both whole sequences and subsequences - ie if a subsequence in an alignment view has a particular ID colour, then only the corresponding range of the structure should be coloured in that way.

        Attachments

          Issue Links

          blocks

          Bug - A problem which impairs or prevents the functions of the product. JAL-3157 text color threshold not preserved across tree subgroup operations

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open

          Improvement - An improvement or enhancement to an existing feature or task. JAL-3156 Alignment consensus and conservation shading should honour hidden-representative sequences

          • Critical - Crashes, loss of data, severe memory leak.
          • Open
          depends on

          Bug - A problem which impairs or prevents the functions of the product. JAL-3726 Sequence ID colourscheme is not applied when view restored from project

          • Blocker - Blocks development and/or testing work, production could not run.
          • Open
          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-3148 Allow view-based colouring of structures (not just 'by sequence')

          • Major - Major loss of function.
          • In Progress

            Activity

              People

              Assignee:
              jalviewadmin Jim Procter
              Reporter:
              anonymax Maxim Tsenkov
              Votes:
              0 Vote for this issue
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: