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  1. Jalview
  2. JAL-3116

Migrate Uniprot and EMBL XML parsing from Castor to JAXB

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.11.0
    • Component/s: data retrieval services
    • Labels:
      None

      Description

      Uniprot and EMBL entries are fetched as XML and unmarshalled to Java using Castor bindings files (uniprot_mapping.xml, embl_mapping.xml).
      Replace this with the more mainstream JAXB XML binding library.

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          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-3204 Minor change to uniprot schema

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Task - A task that needs to be done. JAL-3063 Migrate from Castor to JAXB to enable Jalview project import/export in Jalview-js

          • Major - Major loss of function.
          • Reopened

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Created:
                Updated:
                Resolved: