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  1. Jalview
  2. JAL-2997

Improve the Clustal format parser so that it can cope with numbers

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 2.10.4
    • Fix Version/s: 2.10.4b1
    • Component/s: file format issue
    • Labels:
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      Description

      Dear friends,

      It seems that the sequence numbers (see example MSA attached) are parsed as part of the actual sequences...

      Would be great that this could be improved, as Clustal Omega results now default to this output format and people then open them with Jalview (see example only available for 7 days - https://www.ebi.ac.uk/Tools/services/web/toolresult.ebi?jobId=clustalo-I20180517-102957-0169-8465116-p2m)

      Kind regards,
      Fábio

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          related with

          Improvement - An improvement or enhancement to an existing feature or task. JAL-3004 Optionally write sequence position in right-hand column of clustal files

          • Trivial - Cosmetic problem like misspelt words or misaligned text.
          • Open

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              fmmarquesmadeira Fábio Madeira
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                Dates

                Created:
                Updated:
                Resolved: