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  1. Jalview
  2. JAL-2950

Resolve correct Ensembl REST API endpoint for Uniprot crossreferences to Ensembl

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    • Type: Task
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.11.0
    • Component/s: None
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      Description

      Uniprot subdivides Ensembl cross references by division (protists, bacteria, etc), and Jalview needs to know which REST endpoint to query for these when resolving cross-references.

      See http://www.uniprot.org/database/?query=*&fil=category%3A%22Genome+annotation+databases%22 for details of the cross references as maintained by Uniprot. Could possibly resolve Ensembl endpoint by parsing the URL template field associated with each Uniprot cross-reference database records (e.g. http://www.uniprot.org/database/DB-0147 )

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              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
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                Updated: