Details
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Type: Task
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Status: Open
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Priority: Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: 2.11.0
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Component/s: None
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Labels:
Description
Uniprot subdivides Ensembl cross references by division (protists, bacteria, etc), and Jalview needs to know which REST endpoint to query for these when resolving cross-references.
See http://www.uniprot.org/database/?query=*&fil=category%3A%22Genome+annotation+databases%22 for details of the cross references as maintained by Uniprot. Could possibly resolve Ensembl endpoint by parsing the URL template field associated with each Uniprot cross-reference database records (e.g. http://www.uniprot.org/database/DB-0147 )
See http://www.uniprot.org/database/?query=*&fil=category%3A%22Genome+annotation+databases%22 for details of the cross references as maintained by Uniprot. Could possibly resolve Ensembl endpoint by parsing the URL template field associated with each Uniprot cross-reference database records (e.g. http://www.uniprot.org/database/DB-0147 )