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  1. Jalview
  2. JAL-2927

Export Feature Description in GFF

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    Details

    • Type: Improvement
    • Status: In Progress
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.11.2
    • Component/s: file format issue
    • Labels:
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      Description

      Jalview supports export of features via GFF (version 3 as of 2.11), but for a jalview feature file entry like :
      <html>Fer2 Status: True Positive <a href="http://pfam.xfam.org/family/PF00111">Pfam 8_83</a></html> FER_CAPAA -1 8 83 Pfam 0.0

      The equivalent GFF line is:
      FER_CAPAA uniprot Pfam 8 83 0.0 . .

      The description should be added in column 9 as a note with appropriate character escaping.

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              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
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                Created:
                Updated: