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  1. Jalview
  2. JAL-2823

Edit sequence doesn't carry over and relocate sequence features and annotation

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.11.1
    • Component/s: sequencefeatures
    • Labels:
      None

      Description

      When a sequence is edited via the popup menu, a new dataset sequence may be created that inherits features and annotation. If sequence data was lost or gained via the edit, however, the features and annotation either side of the edited region are not relocated.

      1. import
      SEQ1 ACD---EFG

      2. create three features with different descriptions - on AC, DE, and FG
      3. Select and edit the range D--E to remove D & E.
      >>> the DE feature is still shown, but now overlaid on FG.

        Attachments

          Issue Links

          blocks

          New Feature - A new feature of the product, which has yet to be developed. JAL-415 optionally relocate sequence features after a sequence edit

          • Major - Major loss of function.
          • Open
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2541 Delete/Cut selection doesn't relocate sequence features correctly when start of sequence is removed

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2822 Start and End should be updated when sequence data at beginning or end of alignment added/removed via 'Edit' sequence

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: