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  1. Jalview
  2. JAL-2822

Start and End should be updated when sequence data at beginning or end of alignment added/removed via 'Edit' sequence

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.11.0
    • Component/s: None
    • Labels:

      Description

      If a region of visible sequence is modified via the 'Edit Sequence' popup menu option, and the new version is consistent with the previous sequence, then the dataset references should be preserved, and just the start/end numbers for the visible sequence updated.

      E.g. import this sequence:
      SEQ A---C---DDDDDD

      And select A---C, edit the sequence to just --. The sequence's start-end should then be SEQ/3-8, and only Ds should be shown.

        Attachments

          Issue Links

          blocks

          Bug - A problem which impairs or prevents the functions of the product. JAL-2541 Delete/Cut selection doesn't relocate sequence features correctly when start of sequence is removed

          • Major - Major loss of function.
          • Closed
          depends on

          Bug - A problem which impairs or prevents the functions of the product. JAL-2684 pairwise alignment of region selections do not inherit correct start/end position

          • Major - Major loss of function.
          • Closed
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2823 Edit sequence doesn't carry over and relocate sequence features and annotation

          • Critical - Crashes, loss of data, severe memory leak.
          • Open

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: