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  1. Jalview
  2. JAL-2772

ArrayIndexOutOfBoundsException in findFeatures

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.10.3
    • Fix Version/s: 2.10.3
    • Component/s: Datamodel
    • Labels:

      Description

      Fetch sequences, choose PDB and retrieve 3a6s:

      Exception in thread "Thread-15" java.lang.ArrayIndexOutOfBoundsException: 124
      at jalview.datamodel.Sequence.findFeatures(Sequence.java:1830)
      at jalview.controller.AlignViewController.findColumnsWithFeature(AlignViewController.java:246)
      at jalview.controller.AlignViewController.markColumnsContainingFeatures(AlignViewController.java:178)
      at jalview.gui.AlignFrame.hideFeatureColumns(AlignFrame.java:5525)
      at jalview.gui.SequenceFetcher.parseResult(SequenceFetcher.java:1021)
      at jalview.gui.SequenceFetcher.run(SequenceFetcher.java:786)
      at java.lang.Thread.run(Thread.java:745)

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          duplicates

          Bug - A problem which impairs or prevents the functions of the product. JAL-2741 Wrong sequence range after fetch of PDB 1EMS

          • Major - Major loss of function.
          • Closed

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              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              kmourao Kira Mourão
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                Dates

                Created:
                Updated:
                Resolved: