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  1. Jalview
  2. JAL-2741

Wrong sequence range after fetch of PDB 1EMS

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Duplicate
    • Affects Version/s: 2.10.2b1
    • Fix Version/s: 2.10.3
    • Component/s: Datamodel
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      Description

      Fetch 1EMS from PDB.
      This has 2 chains (A, B) of length 412, 411 respectively.
      Jalview shows sequence limits for both as /10-440.

      In 2.10.2b1 these do at least load and display (and indeed back to 2.8 and probably beyond).
      In 2.10.3/develop this results in an ArrayIndexOutOfBounds exception before they are displayed.
      The exception occurs in the (new) Sequence.findFeatures(fromColumn, toColumn) method - but the root cause is elsewhere.

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Updated:
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