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  1. Jalview
  2. JAL-2684

pairwise alignment of region selections do not inherit correct start/end position

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.8.2, 2.9, 2.10.0, 2.10.1, 2.10.2
    • Fix Version/s: 2.10.3
    • Component/s: analysis
    • Labels:
      None

      Description

      If you do a pairwise alignment of a sub-selection of two sequences and then view the result as an alignment, then start/end ranges are wrong and sequence features are wrongly located.

        Attachments

          Issue Links

          blocks

          Bug - A problem which impairs or prevents the functions of the product. JAL-2541 Delete/Cut selection doesn't relocate sequence features correctly when start of sequence is removed

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2822 Start and End should be updated when sequence data at beginning or end of alignment added/removed via 'Edit' sequence

          • Major - Major loss of function.
          • Closed
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-207 Pairwise alignment loses sequence contexts

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2685 include start/end position of aligned region in pairwise alignment reports

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: