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  1. Jalview
  2. JAL-2625

Implement Blosum62/substitution model colouring with respect to reference sequence

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    Details

    • Type: New Feature
    • Status: Open
    • Priority: Blocker
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.12.0
    • Component/s: renderer
    • Labels:
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      Description

      1. Open a protein alignment. Enable Blosum62 colouring.
      2. right click and select Set as Reference in the sequence ID popup menu
      Should see the Blosum62 colouring change so the reference sequence becomes blue, and mutations in other sequences w.r.t. to the reference sequence coloured according to likelihood.

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            Assignee:
            jprocter Jim Procter
            Reporter:
            jprocter Jim Procter
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              Dates

              Created:
              Updated: