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  1. Jalview
  2. JAL-2499

fix Sequence Features PCA calculation

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    Details

    • Type: Task
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.10.2
    • Component/s: None
    • Labels:

      Description

      1. load uniref50.fa and exampleFeatures.txt
      2. Compute a PCA with the Sequence Features Similarity score

      On features/JAL-2393customMatrices (f647b9ceacdc464621491653cfb3382b42ca14a5) this results in a PCA viewer where all the points lie at the origin. File->Output Values shows the input matrix for PCA to be all zeros.

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            Assignee:
            gmungoc Mungo Carstairs
            Reporter:
            jprocter Jim Procter
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              Updated:
              Resolved: