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  1. Jalview
  2. JAL-2493

specify thresholds as percentages for graphlines and annotation based colourschemes

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    Details

    • Type: New Feature
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
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      Description

      Follow on from JAL-2432: Currently, only the UI allows thresholds to be set as percentages - which are then translated to absolute values. Ideally, it should be possible to specify GRAPHLINE, Annotation colouring and also Sequence Feature colouring thresholds as either a percentile or absolute value. This requires the internal representation, the annotation file format and the sequence feature file format to be extended to allow the units (absolute or percentile) for a threshold to be stored as well as the value of the threshold.

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              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
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                Created:
                Updated: