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  1. Jalview
  2. JAL-2266

Handle NullPointerException in New View after viewing a PDB structure

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    Details

    • Type: Task
    • Status: Closed
    • Priority: Minor
    • Resolution: Duplicate
    • Affects Version/s: 2.10.0
    • Fix Version/s: 2.10.0b1
    • Component/s: None
    • Labels:
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      Description

      (Jalview manual Exercise 27.c)
      Load uniref50.fa, view structure 1A70 for FER1_SPIOL (Jmol viewer).
      New View -
      java.lang.NullPointerException
      at jalview.gui.Jalview2XML.copyJarEntry(Jalview2XML.java:2722)
      at jalview.gui.Jalview2XML.loadPDBFile(Jalview2XML.java:2682)
      at jalview.gui.Jalview2XML.loadFromObject(Jalview2XML.java:3025)
      at jalview.gui.Jalview2XML.copyAlignPanel(Jalview2XML.java:5358)
      at jalview.gui.AlignFrame.newView(AlignFrame.java:2729)

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          duplicates

          Bug - A problem which impairs or prevents the functions of the product. JAL-2241 NPE raised when creating a new view for an alignment with associated structure data

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Created:
                Updated:
                Resolved: